IL_6OJ2_349

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

6OJ2|1|RA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_349 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.2338

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6OJ2|1|RA|G|993
6OJ2|1|RA|C|994
6OJ2|1|RA|C|995
6OJ2|1|RA|A|996
*
6OJ2|1|RA|U|1159
6OJ2|1|RA|G|1160
6OJ2|1|RA|C|1161

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21