IL_6OJ2_351

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_351 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.1153

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6OJ2|1|RA|G|1666
6OJ2|1|RA|G|1667
6OJ2|1|RA|A|1668
6OJ2|1|RA|A|1669
6OJ2|1|RA|C|1670
6OJ2|1|RA|U|1671
6OJ2|1|RA|C|1672
6OJ2|1|RA|U|1673
6OJ2|1|RA|G|1674
*
6OJ2|1|RA|C|1990
6OJ2|1|RA|U|1991
6OJ2|1|RA|G|1992
6OJ2|1|RA|U|1993
6OJ2|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14