IL_6OJ2_353

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6OJ2|1|RA|C|2111, 6OJ2|1|RA|G|2112, 6OJ2|1|RA|U|2113, 6OJ2|1|RA|A|2114, 6OJ2|1|RA|G|2115, 6OJ2|1|RA|U|2118, 6OJ2|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_353 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2952

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6OJ2|1|RA|G|2110
6OJ2|1|RA|C|2111
6OJ2|1|RA|G|2112
6OJ2|1|RA|U|2113
6OJ2|1|RA|A|2114
6OJ2|1|RA|G|2115
6OJ2|1|RA|G|2116
6OJ2|1|RA|A|2117
6OJ2|1|RA|U|2118
6OJ2|1|RA|A|2119
6OJ2|1|RA|G|2120
*
6OJ2|1|RA|C|2178
6OJ2|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA