3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AGUUGCCAGC*GGGCACUCU
Length
19 nucleotides
Bulged bases
6OJ2|1|XA|U|1125, 6OJ2|1|XA|C|1129
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OJ2|1|XA|A|1123
6OJ2|1|XA|G|1124
6OJ2|1|XA|U|1125
6OJ2|1|XA|U|1126
6OJ2|1|XA|G|1127
6OJ2|1|XA|C|1128
6OJ2|1|XA|C|1129
6OJ2|1|XA|A|1130
6OJ2|1|XA|G|1131
6OJ2|1|XA|C|1132
*
6OJ2|1|XA|G|1142
6OJ2|1|XA|G|1143
6OJ2|1|XA|G|1144
6OJ2|1|XA|C|1145
6OJ2|1|XA|A|1146
6OJ2|1|XA|C|1147
6OJ2|1|XA|U|1148
6OJ2|1|XA|C|1149
6OJ2|1|XA|U|1150

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XI
30S ribosomal protein S9
Chain XJ
30S ribosomal protein S10

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1979 s