3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCUAG*CAAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_368 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.4266
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6OJ2|1|RA|G|875
6OJ2|1|RA|C|876
6OJ2|1|RA|U|877
6OJ2|1|RA|A|878
6OJ2|1|RA|G|879
*
6OJ2|1|RA|C|898
6OJ2|1|RA|A|899
6OJ2|1|RA|A|900
6OJ2|1|RA|A|901
6OJ2|1|RA|C|902

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QY
Transfer RNA; tRNA
Chain RQ
50S ribosomal protein L16
Chain RZ
50S ribosomal protein L25

Coloring options:


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