IL_6OKK_015

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUGA*UG

Length

8 nucleotides

Bulged bases

6OKK|1|A|U|326, 6OKK|1|A|U|327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_015 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2398

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6OKK|1|A|U|324
6OKK|1|A|U|325
6OKK|1|A|U|326
6OKK|1|A|U|327
6OKK|1|A|G|328
6OKK|1|A|A|329
*
6OKK|1|A|U|351
6OKK|1|A|G|352

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S8

Chain V

40S ribosomal protein S11