IL_6OKK_038

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

6OKK|1|A|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_038 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2409

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6OKK|1|A|A|936
6OKK|1|A|G|937
*
6OKK|1|A|C|1027
6OKK|1|A|U|1028
6OKK|1|A|U|1029

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S15

Chain d

40S ribosomal protein S27