IL_6OKK_042
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUGUCAG*CUUAGAUUUU
- Length
- 17 nucleotides
- Bulged bases
- 6OKK|1|A|A|982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_042 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.1835
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6OKK|1|A|A|962
6OKK|1|A|U|963
6OKK|1|A|G|964
6OKK|1|A|U|965
6OKK|1|A|C|966
6OKK|1|A|A|967
6OKK|1|A|G|968
*
6OKK|1|A|C|979
6OKK|1|A|U|980
6OKK|1|A|U|981
6OKK|1|A|A|982
6OKK|1|A|G|983
6OKK|1|A|A|984
6OKK|1|A|U|985
6OKK|1|A|U|986
6OKK|1|A|U|987
6OKK|1|A|U|988
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S3a
- Chain P
- 40S ribosomal protein S11
Coloring options: