IL_6OKK_046
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUG*CCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_046 not in the Motif Atlas
- Geometric match to IL_3SZX_002
- Geometric discrepancy: 0.0941
- The information below is about IL_3SZX_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 95
Unit IDs
6OKK|1|A|A|1117
6OKK|1|A|U|1118
6OKK|1|A|G|1119
*
6OKK|1|A|C|1169
6OKK|1|A|C|1170
6OKK|1|A|U|1171
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S3a
- Chain C
- 40S ribosomal protein SA
- Chain U
- 40S ribosomal protein S15
- Chain d
- 40S ribosomal protein S27
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