IL_6OKK_048

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6OKK|1|A|A|1928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_048 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1044

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6OKK|1|A|G|1247
6OKK|1|A|A|1248
*
6OKK|1|A|U|1927
6OKK|1|A|A|1928
6OKK|1|A|C|1929

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain c

40S ribosomal protein S26