IL_6OKK_054
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6OKK|1|A|C|1375
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_054 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1887
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OKK|1|A|U|1373
6OKK|1|A|G|1374
6OKK|1|A|C|1375
6OKK|1|A|A|1376
6OKK|1|A|U|1377
*
6OKK|1|A|A|1682
6OKK|1|A|U|1683
6OKK|1|A|G|1684
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain N
- 40S ribosomal protein S20e
- Chain O
- 40S ribosomal protein S10
- Chain T
- 40S ribosomal protein S29
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