IL_6OKK_058

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUGCU*AGAGG

Length

11 nucleotides

Bulged bases

6OKK|1|A|G|1443

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OKK|1|A|C|1440
6OKK|1|A|C|1441
6OKK|1|A|U|1442
6OKK|1|A|G|1443
6OKK|1|A|C|1444
6OKK|1|A|U|1445
*
6OKK|1|A|A|1628
6OKK|1|A|G|1629
6OKK|1|A|A|1630
6OKK|1|A|G|1631
6OKK|1|A|G|1632

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S16

Chain N

40S ribosomal protein S20e

Chain W

40S ribosomal protein S17