IL_6OLG_013

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_013 not in the Motif Atlas

Geometric match to IL_7RQB_005

Geometric discrepancy: 0.1785

The information below is about IL_7RQB_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6OLG|1|A2|G|187
6OLG|1|A2|G|188
6OLG|1|A2|G|189
*
6OLG|1|A2|C|245
6OLG|1|A2|C|246

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L26

Chain Aj

60S ribosomal protein L37