IL_6OLG_017
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6OLG|1|A2|G|403, 6OLG|1|A2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLG_017 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1439
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6OLG|1|A2|G|381
6OLG|1|A2|A|382
6OLG|1|A2|A|383
6OLG|1|A2|C|384
*
6OLG|1|A2|G|395
6OLG|1|A2|A|396
6OLG|1|A2|G|397
6OLG|1|A2|U|398
6OLG|1|A2|U|399
6OLG|1|A2|C|400
6OLG|1|A2|A|401
6OLG|1|A2|A|402
6OLG|1|A2|G|403
6OLG|1|A2|A|404
6OLG|1|A2|G|405
6OLG|1|A2|G|406
6OLG|1|A2|G|407
6OLG|1|A2|C|408
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A
- Cadherin-1
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AP
- 60S ribosomal protein L17
- Chain AY
- 60S ribosomal protein L26
- Chain Al
- 60S ribosomal protein L39
Coloring options: