IL_6OLG_018
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLG_018 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.1243
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OLG|1|A2|G|409
6OLG|1|A2|U|410
6OLG|1|A2|G|411
6OLG|1|A2|A|412
6OLG|1|A2|A|413
6OLG|1|A2|A|414
6OLG|1|A2|C|415
*
6OLG|1|A3|G|13
6OLG|1|A3|U|14
6OLG|1|A3|G|15
6OLG|1|A3|G|16
6OLG|1|A3|A|17
6OLG|1|A3|U|18
6OLG|1|A3|C|19
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4
- Chain AP
- 60S ribosomal protein L17
- Chain Ae
- 60S ribosomal protein L32
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