IL_6OLG_033

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCCCG*CC

Length

8 nucleotides

Bulged bases

6OLG|1|A2|C|497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_033 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2639

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6OLG|1|A2|G|493
6OLG|1|A2|G|494
6OLG|1|A2|C|495
6OLG|1|A2|C|496
6OLG|1|A2|C|497
6OLG|1|A2|G|498
*
6OLG|1|A2|C|648
6OLG|1|A2|C|649

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4