IL_6OLG_035

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

6OLG|1|A2|U|507, 6OLG|1|A2|U|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_035 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2468

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OLG|1|A2|U|506
6OLG|1|A2|U|507
6OLG|1|A2|U|508
6OLG|1|A2|C|509
*
6OLG|1|A2|G|640
6OLG|1|A2|G|641

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain Aa

60S ribosomal protein L27a