IL_6OLG_039

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUGGGAAGG*CAGCAGCACUCGC

Length

23 nucleotides

Bulged bases

6OLG|1|A2|U|719, 6OLG|1|A2|G|720, 6OLG|1|A2|A|922, 6OLG|1|A2|C|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|G|717
6OLG|1|A2|C|718
6OLG|1|A2|U|719
6OLG|1|A2|G|720
6OLG|1|A2|G|721
6OLG|1|A2|G|722
6OLG|1|A2|A|723
6OLG|1|A2|A|724
6OLG|1|A2|G|725
6OLG|1|A2|G|726
*
6OLG|1|A2|C|915
6OLG|1|A2|A|916
6OLG|1|A2|G|917
6OLG|1|A2|C|918
6OLG|1|A2|A|919
6OLG|1|A2|G|920
6OLG|1|A2|C|921
6OLG|1|A2|A|922
6OLG|1|A2|C|923
6OLG|1|A2|U|924
6OLG|1|A2|C|925
6OLG|1|A2|G|926
6OLG|1|A2|C|927

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7

Chain AM

60S ribosomal protein L14

Chain AS

60S ribosomal protein L18a