IL_6OLG_055

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_055 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.2297

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6OLG|1|A2|C|1456
6OLG|1|A2|G|1457
6OLG|1|A2|C|1458
*
6OLG|1|A2|G|1471
6OLG|1|A2|G|1472

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain Aa

60S ribosomal protein L27a

Chain Ao

60S ribosomal protein L36a