IL_6OLG_059

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_059 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1345

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6OLG|1|A2|C|1533
6OLG|1|A2|G|1534
6OLG|1|A2|A|1535
6OLG|1|A2|A|1536
6OLG|1|A2|G|1537
*
6OLG|1|A2|U|1554
6OLG|1|A2|G|1555
6OLG|1|A2|G|1556
6OLG|1|A2|A|1557
6OLG|1|A2|G|1558

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AR

60S ribosomal protein L19

Chain Ap

60S ribosomal protein L37a