IL_6OLG_065

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUCGCCCACG*CG

Length

12 nucleotides

Bulged bases

6OLG|1|A2|C|1680, 6OLG|1|A2|C|1699, 6OLG|1|A2|C|1700, 6OLG|1|A2|A|1701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|C|1676
6OLG|1|A2|U|1677
6OLG|1|A2|C|1678
6OLG|1|A2|G|1679
6OLG|1|A2|C|1680
6OLG|1|A2|C|1699
6OLG|1|A2|C|1700
6OLG|1|A2|A|1701
6OLG|1|A2|C|1702
6OLG|1|A2|G|1703
*
6OLG|1|A2|C|1822
6OLG|1|A2|G|1823

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7

Chain AQ

60S ribosomal protein L18

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29