IL_6OLG_066

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

6OLG|1|A2|G|1706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_066 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1334

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6OLG|1|A2|A|1705
6OLG|1|A2|G|1706
6OLG|1|A2|U|1707
*
6OLG|1|A2|A|1819
6OLG|1|A2|U|1820

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L7

Chain AQ

60S ribosomal protein L18

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29