IL_6OLG_071

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_071 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.1255

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6OLG|1|A2|A|1731
6OLG|1|A2|G|1732
6OLG|1|A2|A|1733
*
6OLG|1|A2|U|1761
6OLG|1|A2|A|1762
6OLG|1|A2|U|1763

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

60S ribosomal protein L5

Chain AI

60S ribosomal protein L10