IL_6OLG_092

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_092 not in the Motif Atlas

Geometric match to IL_7A0S_046

Geometric discrepancy: 0.1444

The information below is about IL_7A0S_046

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6OLG|1|A2|G|2385
6OLG|1|A2|G|2386
6OLG|1|A2|U|2387
6OLG|1|A2|U|2388
*
6OLG|1|A2|A|2762
6OLG|1|A2|C|2763

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L23a

Chain Ag

60S ribosomal protein L34

Chain Aj

60S ribosomal protein L37

Chain Al

60S ribosomal protein L39