IL_6OLG_101

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6OLG|1|A2|U|2666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_101 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2353

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6OLG|1|A2|C|2625
6OLG|1|A2|A|2626
6OLG|1|A2|G|2627
*
6OLG|1|A2|C|2664
6OLG|1|A2|G|2665
6OLG|1|A2|U|2666
6OLG|1|A2|G|2667

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L34