IL_6OLG_102

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCC*GGG

Length

7 nucleotides

Bulged bases

6OLG|1|A2|G|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_102 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.2597

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6OLG|1|A2|C|2630
6OLG|1|A2|G|2631
6OLG|1|A2|C|2632
6OLG|1|A2|C|2633
*
6OLG|1|A2|G|2659
6OLG|1|A2|G|2660
6OLG|1|A2|G|2661

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

60S ribosomal protein L27

Chain Ac

60S ribosomal protein L30

Chain Ag

60S ribosomal protein L34

Chain Ap

60S ribosomal protein L37a