IL_6OLG_106

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_106 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.2059

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6OLG|1|A2|G|2826
6OLG|1|A2|G|2827
6OLG|1|A2|A|2828
6OLG|1|A2|A|2829
*
6OLG|1|A2|U|3811
6OLG|1|A2|C|3812

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23