IL_6OLG_110

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_110 not in the Motif Atlas

Homologous match to IL_8C3A_086

Geometric discrepancy: 0.1947

The information below is about IL_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6OLG|1|A2|G|2875
6OLG|1|A2|G|2876
*
6OLG|1|A2|C|3573
6OLG|1|A2|G|3574
6OLG|1|A2|A|3575
6OLG|1|A2|C|3576

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain BI

40S ribosomal protein S8