IL_6OLG_141

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_141 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1559

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OLG|1|A2|C|4374
6OLG|1|A2|C|4375
6OLG|1|A2|A|4376
6OLG|1|A2|A|4377
6OLG|1|A2|G|4378
*
6OLG|1|A2|C|4388
6OLG|1|A2|G|4389
6OLG|1|A2|A|4390
6OLG|1|A2|C|4391
6OLG|1|A2|G|4392

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

60S ribosomal protein L40