IL_6OLG_146

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

6OLG|1|A2|A|4450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_146 not in the Motif Atlas

Geometric match to IL_8GLP_150

Geometric discrepancy: 0.1096

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|U|4430
6OLG|1|A2|U|4431
6OLG|1|A2|G|4432
*
6OLG|1|A2|C|4447
6OLG|1|A2|C|4448
6OLG|1|A2|A|4449
6OLG|1|A2|A|4450
6OLG|1|A2|G|4451

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain AO

60S ribosomal protein L13a

Chain Am

60S ribosomal protein L40