IL_6OLG_156

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

6OLG|1|A2|A|4618, 6OLG|1|A2|U|4619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_156 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2377

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OLG|1|A2|U|4603
6OLG|1|A2|U|4604
*
6OLG|1|A2|A|4617
6OLG|1|A2|A|4618
6OLG|1|A2|U|4619
6OLG|1|A2|G|4620

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain Ad

60S ribosomal protein L31