IL_6OLG_168

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6OLG|1|A2|C|4971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_168 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.2839

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6OLG|1|A2|G|4970
6OLG|1|A2|C|4971
6OLG|1|A2|A|4972
*
6OLG|1|A2|U|4993
6OLG|1|A2|C|4994

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24