IL_6OLG_180

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6OLG|1|B1|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_180 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.332

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6OLG|1|B1|C|37
6OLG|1|B1|A|38
6OLG|1|B1|A|39
6OLG|1|B1|A|40
*
6OLG|1|B1|U|514
6OLG|1|B1|G|515
6OLG|1|B1|A|516
6OLG|1|B1|C|517
6OLG|1|B1|G|518

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BJ

40S ribosomal protein S9