IL_6OLG_188

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_188 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.2083

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6OLG|1|B1|U|116
6OLG|1|B1|C|117
6OLG|1|B1|C|118
6OLG|1|B1|U|119
6OLG|1|B1|U|120
6OLG|1|B1|U|121
*
6OLG|1|B1|A|343
6OLG|1|B1|U|344
6OLG|1|B1|U|345
6OLG|1|B1|C|346
6OLG|1|B1|G|347

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BI

40S ribosomal protein S8