IL_6OLG_190

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_190 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2347

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6OLG|1|B1|U|152
6OLG|1|B1|G|153
6OLG|1|B1|U|154
6OLG|1|B1|G|155
*
6OLG|1|B1|U|163
6OLG|1|B1|A|164
6OLG|1|B1|G|165
6OLG|1|B1|A|166

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24

Chain BG

40S ribosomal protein S6

Chain BY

40S ribosomal protein S24