IL_6OLG_206

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6OLG|1|B1|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_206 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2344

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6OLG|1|B1|G|606
6OLG|1|B1|U|607
6OLG|1|B1|C|608
*
6OLG|1|B1|G|635
6OLG|1|B1|C|636

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain Be

40S ribosomal protein S30

Chain Bx

mRNA