IL_6OLG_218

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_218 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.1717

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6OLG|1|B1|A|922
6OLG|1|B1|G|923
*
6OLG|1|B1|C|1019
6OLG|1|B1|A|1020
6OLG|1|B1|U|1021
6OLG|1|B1|U|1022

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain BW

40S ribosomal protein S15a

Chain Bb

40S ribosomal protein S27