IL_6OLG_229

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6OLG|1|B1|C|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_229 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.4851

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6OLG|1|B1|G|1108
6OLG|1|B1|C|1109
6OLG|1|B1|G|1110
*
6OLG|1|B1|C|1123
6OLG|1|B1|C|1124

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BB

40S ribosomal protein S3a

Chain BR

40S ribosomal protein S17

Chain Bb

40S ribosomal protein S27