IL_6OLG_237

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

6OLG|1|B1|G|1285, 6OLG|1|B1|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|B1|G|1281
6OLG|1|B1|A|1282
6OLG|1|B1|C|1283
6OLG|1|B1|A|1284
6OLG|1|B1|G|1285
6OLG|1|B1|G|1286
6OLG|1|B1|A|1287
6OLG|1|B1|U|1288
6OLG|1|B1|U|1289
6OLG|1|B1|G|1290
*
6OLG|1|B1|C|1309
6OLG|1|B1|U|1310
6OLG|1|B1|C|1311
6OLG|1|B1|G|1312
6OLG|1|B1|A|1313
6OLG|1|B1|U|1314
6OLG|1|B1|U|1315
6OLG|1|B1|C|1316

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain BM

40S ribosomal protein S12

Chain Bd

40S ribosomal protein S29

Chain Bf

40S ribosomal protein S27a