IL_6OLG_247

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_247 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2568

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6OLG|1|B1|C|1412
6OLG|1|B1|G|1413
6OLG|1|B1|A|1414
6OLG|1|B1|C|1415
*
6OLG|1|B1|G|1422
6OLG|1|B1|C|1423
6OLG|1|B1|G|1424
6OLG|1|B1|G|1425

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S16

Chain BT

40S ribosomal protein S19