IL_6OLG_251

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_251 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1496

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6OLG|1|B1|G|1604
6OLG|1|B1|G|1605
6OLG|1|B1|G|1606
6OLG|1|B1|A|1607
6OLG|1|B1|U|1608
6OLG|1|B1|C|1609
6OLG|1|B1|G|1610
*
6OLG|1|B1|C|1629
6OLG|1|B1|A|1630
6OLG|1|B1|U|1631
6OLG|1|B1|G|1632
6OLG|1|B1|A|1633
6OLG|1|B1|A|1634
6OLG|1|B1|C|1635

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BS

40S ribosomal protein S18

Chain BT

40S ribosomal protein S19

Chain BZ

40S ribosomal protein S25