IL_6OLG_267

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGU*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_267 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3916

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|G|475
6OLG|1|A2|G|476
6OLG|1|A2|G|477
6OLG|1|A2|U|478
*
6OLG|1|A2|G|665
6OLG|1|A2|G|666
6OLG|1|A2|C|667

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain At

60S ribosomal protein L28