IL_6OLG_293

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

6OLG|1|A2|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_293 not in the Motif Atlas

Homologous match to IL_8P9A_257

Geometric discrepancy: 0.3228

The information below is about IL_8P9A_257

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6OLG|1|A2|G|1532
6OLG|1|A2|C|1533
*
6OLG|1|A2|G|1558
6OLG|1|A2|G|1559
6OLG|1|A2|U|1560

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AR

60S ribosomal protein L19

Chain Ap

60S ribosomal protein L37a