IL_6OLI_002

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6OLI|1|t|A|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_002 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.2117

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6OLI|1|D|G|25
6OLI|1|D|C|26
*
6OLI|1|t|G|342
6OLI|1|t|A|343
6OLI|1|t|C|344

Current chains

Chain D

5.8S ribosomal RNA

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Z

60S ribosomal protein L26