IL_6OLI_018

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

6OLI|1|S2|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_018 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3101

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6OLI|1|S2|C|37
6OLI|1|S2|A|38
6OLI|1|S2|A|39
6OLI|1|S2|A|40
*
6OLI|1|S2|U|514
6OLI|1|S2|G|515
6OLI|1|S2|A|516
6OLI|1|S2|OMC|517
6OLI|1|S2|G|518

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9