IL_6OLI_026

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

6OLI|1|S2|C|139, 6OLI|1|S2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|S2|G|130
6OLI|1|S2|C|139
6OLI|1|S2|C|140
6OLI|1|S2|A|141
6OLI|1|S2|C|142
6OLI|1|S2|U|143
6OLI|1|S2|U|144
*
6OLI|1|S2|A|175
6OLI|1|S2|U|176
6OLI|1|S2|G|177
6OLI|1|S2|C|178
6OLI|1|S2|C|179
6OLI|1|S2|G|180
6OLI|1|S2|A|181
6OLI|1|S2|C|182
*
6OLI|1|S2|A|175
6OLI|1|S2|U|176
6OLI|1|S2|G|177
6OLI|1|S2|C|178
6OLI|1|S2|C|179
6OLI|1|S2|G|180
6OLI|1|S2|A|181
6OLI|1|S2|C|182

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6