IL_6OLI_034

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6OLI|1|S2|U|368, 6OLI|1|S2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_034 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2849

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6OLI|1|S2|U|366
6OLI|1|S2|U|367
6OLI|1|S2|U|368
6OLI|1|S2|C|369
6OLI|1|S2|G|370
6OLI|1|S2|A|371
*
6OLI|1|S2|U|393
6OLI|1|S2|G|394

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain t

Large subunit ribosomal RNA; LSU rRNA