IL_6OLI_059

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6OLI|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_059 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1176

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6OLI|1|S2|G|924
6OLI|1|S2|G|925
6OLI|1|S2|A|926
6OLI|1|S2|C|927
*
6OLI|1|S2|G|1014
6OLI|1|S2|U|1015
6OLI|1|S2|U|1016
6OLI|1|S2|U|1017
6OLI|1|S2|U|1018

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27