IL_6OLI_083
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- C(4AC)G*CAGG
- Length
- 7 nucleotides
- Bulged bases
- 6OLI|1|S2|A|1489
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLI_083 not in the Motif Atlas
- Geometric match to IL_1YZ9_001
- Geometric discrepancy: 0.1503
- The information below is about IL_1YZ9_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6OLI|1|S2|C|1336
6OLI|1|S2|4AC|1337
6OLI|1|S2|G|1338
*
6OLI|1|S2|C|1488
6OLI|1|S2|A|1489
6OLI|1|S2|G|1490
6OLI|1|S2|G|1491
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
- Chain u
- Transfer RNA; tRNA
- Chain w
- mRNA
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