IL_6OLI_085

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_085 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3516

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6OLI|1|S2|C|1363
6OLI|1|S2|U|1364
6OLI|1|S2|G|1365
6OLI|1|S2|G|1366
*
6OLI|1|S2|C|1373
6OLI|1|S2|5MC|1374
6OLI|1|S2|G|1375

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sa

40S ribosomal protein S26